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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103518707_103519622_R

Intron Information:

Intron Rank:
132892
Intron Class:
major
Intron Phase:
Intron Coordinates:
103518707 - 103519622
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTGACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCCCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.7
0.42
0.9
63.6
36.1
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
65.1
0.47
1.2
68.53
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020882
103515664 - 103521540
5877