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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103519682_103521017_R

Intron Information:

Intron Rank:
132893
Intron Class:
major
Intron Phase:
Intron Coordinates:
103519682 - 103521017
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTAGCAAGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
37.7
-0.8
2.4
58.9
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018723
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020882
103515664 - 103521540
5877