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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10356899_10359439_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10356899 - 10359439
Intron Length:
2541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACGAT
U12 Branch Point Sequence:
AGGTGACGATGT
Flanking Amino Acid:
EATSCCRPCTRAQAAAAPLR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
48.7
-0
1.4
46.5
46.6
Major PPT
79.7
0.67
1
76.9
42.1
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
28.7
-1.5
2.1
41.94
40.3

Associated Gene:

Gene:
CEP68
Ensembl Gene ID:
ENSAPLG00000016942
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023842
10352874 - 10359876
7003