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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_103798986_103802982_F

Intron Information:

Intron Rank:
131943
Intron Class:
major
Intron Phase:
Intron Coordinates:
103798986 - 103802982
Intron Length:
3997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
TATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
37.4
-1.4
3.1
48.6
47.2
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020837
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044730
103796243 - 103802984
6742