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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10387196_10392819_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10387196 - 10392819
Intron Length:
5624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTCTCCTTATTT
Flanking Amino Acid:
TTSGNVTVEKIPVGNEIEGM
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.4
0.75
0.8
77
31.6
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
68.8
0.67
1.6
80.47
41.8

Associated Gene:

Gene:
SLC1A4
Ensembl Gene ID:
ENSAPLG00000009621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010030
10377865 - 10402803
24939