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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10393670_10402042_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10393670 - 10402042
Intron Length:
8373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCT
5'SS Class:
major
3'SS Sequence:
TTGTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTATTTTACA
Flanking Amino Acid:
KTVDSFLDLVRNLFPANLVA
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.1
43
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
26.6
-2.7
3.4
38.8
46.5
Minor BPS
58.1
0.25
1.8
71.98
40

Associated Gene:

Gene:
SLC1A4
Ensembl Gene ID:
ENSAPLG00000009621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010030
10377865 - 10402803
24939