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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104041621_104044709_R

Intron Information:

Intron Rank:
131413
Intron Class:
major
Intron Phase:
Intron Coordinates:
104041621 - 104044709
Intron Length:
3089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
79.9
31.4
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
56.9
0.2
1.9
72.13
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036465
104040266 - 104044870
4605