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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1044403_1045365_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1044403 - 1045365
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTCTTCTTCCCT
Flanking Amino Acid:
PLLLYMPGKIGAFARRMLEK
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
75.1
0.57
0.7
73.5
24.7
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
44.7
-0.3
3.6
78.66
44.1

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048085
964035 - 1047987
83953
ENSAPLT00000021081
964035 - 1045732
81698
ENSAPLT00000011600
954416 - 1047987
93572