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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104537911_104547077_R

Intron Information:

Intron Rank:
48
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
104537911 - 104547077
Intron Length:
9167

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCAACAGGT
5'SS Class:
weak_major
3'SS Sequence:
AGGTTGTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
AGGTTGTGCACA
Flanking Amino Acid:
LLQAWPPMEMNGNPWVKLGT
Intron Amino Acid Position:
2080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.4
58.7
43
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
60.2
0.23
1.1
53.2
45.4
Minor 5ss
28.6
-2.4
4.3
43.2
45.1
Minor BPS
40
-0.7
2.4
50.62
40.8

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125