About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104547211_104568347_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104547211 - 104568347
Intron Length:
21137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATTCATAATT
Flanking Amino Acid:
VLRACWLETKVEITDIENEE
Intron Amino Acid Position:
2036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
60
0.39
1.6
73.38
37.1

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125