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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104568544_104570945_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104568544 - 104570945
Intron Length:
2402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TATTGTTTAATT
Flanking Amino Acid:
VSAVHASVEKGEKVVSSDDL
Intron Amino Acid Position:
1970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.9
0.7
0.9
74.2
39.4
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
69.7
0.7
1.7
84.68
36.4

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125