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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104571024_104580220_R

Intron Information:

Intron Rank:
45
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
104571024 - 104580220
Intron Length:
9197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GAGCAAATGACAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTACTTTAACA
Flanking Amino Acid:
CAIKKIICTLSSSTSVKDPL
Intron Amino Acid Position:
1944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
100
1.24
0.5
100
0
Major PPT
49.3
-0
1.1
39.9
42.3
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
76.4
0.82
1.2
79.82
36.4

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125