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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104580424_104580674_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104580424 - 104580674
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTCAAAAATT
Flanking Amino Acid:
FITYLKNSKQDVLQKYGYLY
Intron Amino Acid Position:
1877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.1
0.63
0.9
72
37.7
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
48.6
-0
2.1
75.08
41.5

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125