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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104580895_104586596_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104580895 - 104586596
Intron Length:
5702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CAATCTTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATGATTAAAT
Flanking Amino Acid:
ITFSSKAVTKLTVETRIEVT
Intron Amino Acid Position:
1818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
80
0.75
1
78.6
31
Major PPT
79.9
0.67
0.9
76.9
36.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
50.6
0.1
2.1
73.09
42.8

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125