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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104591603_104594577_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104591603 - 104594577
Intron Length:
2975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTCTACAA
Flanking Amino Acid:
YKRETILGLAETLEENVYKI
Intron Amino Acid Position:
1585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
71.6
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.9
0.58
1.1
77
36.3
Minor 5ss
36.3
-1.5
2.7
39
40.2
Minor BPS
48.5
-0.1
2
68.5
38

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125