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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104617395_104617914_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104617395 - 104617914
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGGAT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTGTTGTTACGA
Flanking Amino Acid:
RSLTYLRPLHGQEFGDVLKS
Intron Amino Acid Position:
1389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.1
34.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
33.3
-1.9
3.7
50.9
46.1
Minor BPS
44.8
-0.3
2.4
61.8
45

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125