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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104625571_104627787_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104625571 - 104627787
Intron Length:
2217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
ATTCTTTATCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTCTTTATCA
Flanking Amino Acid:
GVSSSLQTQVAVNHHMSLML
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.8
0.45
1.1
68.7
40.9
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
66.7
0.52
1.6
73.35
38.3

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125