About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104639578_104641783_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104639578 - 104641783
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGATTATTAAAT
Flanking Amino Acid:
TCLQSDTCYEIFTESLLCSS
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.3
0.82
0.6
85.3
22.1
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
55.4
0.25
1.7
70.79
39.1

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125