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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104641887_104643367_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104641887 - 104643367
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
AAAATGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GAATATTTAATT
Flanking Amino Acid:
MIRLTRHTGRKQPSVNETQW
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
85.8
30.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
62.8
0.29
1
55.2
44.5
Minor 5ss
39.7
-1.2
2.8
53.7
36.8
Minor BPS
62
0.45
1.5
72.02
38.6

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125