About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104664308_104664571_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104664308 - 104664571
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGCA
5'SS Class:
major
3'SS Sequence:
CTTTGTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTGTTAAACA
Flanking Amino Acid:
QELLLSVNFSKLTLEQKELC
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
71.2
32.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
73.5
0.53
1
69.8
39.5
Minor 5ss
34
-1.8
3.2
41.2
39.4
Minor BPS
54
0.12
2.1
70.26
42.8

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125