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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104664707_104665499_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104664707 - 104665499
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGAAA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCAACATTGATT
Flanking Amino Acid:
VAIGKGEDGGRFILPGEVDI
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
68.7
37.3
Major BPS
76.2
0.65
1
67
39.8
Major PPT
86.2
0.81
0.8
77.9
36.6
Minor 5ss
34
-1.8
2.9
39.8
45.9
Minor BPS
54.3
0.22
1.7
69.74
41.2

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125