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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104665652_104666985_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104665652 - 104666985
Intron Length:
1334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTCTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTGTCTTGGACA
Flanking Amino Acid:
VNVASIQDYLSKIKKRAWVL
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.5
40.3
Major BPS
69.1
0.48
1
70
32.1
Major PPT
70.7
0.47
1.1
68.3
42.2
Minor 5ss
37.1
-1.5
3.2
45
44.5
Minor BPS
65.8
0.49
1.5
74.8
36.8

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125