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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104668112_104669185_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104668112 - 104669185
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTCTACT
Flanking Amino Acid:
AHDGGFLSLECEIKLVPKRL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
48.7
-0
2
73.14
43.6

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125