About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104669380_104670859_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104669380 - 104670859
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCTTTCTTAATT
Flanking Amino Acid:
LSSEKRKKIKDKESYYPLID
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
78
0.96
1.1
83.97
37.3

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125