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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104670924_104672513_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104670924 - 104672513
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CACGTTTATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCATATTAATC
Flanking Amino Acid:
QQGEWDQADQPGYDEINPDW
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
67
0.38
0.9
61.9
38.7
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
52.3
0.05
1.6
60.55
38.7

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125