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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104685463_104685577_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104685463 - 104685577
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TACCCATACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATACCC
Flanking Amino Acid:
YRGELRSYLVSVGTNQSFQE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
61.3
0.26
0.9
59.1
35.9
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
56.2
0.18
1.9
74.35
36.6

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125