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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104689623_104691771_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
104689623 - 104691771
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGTAGATT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATATATATTT
Flanking Amino Acid:
LFLCSGLIRIIPAKFSLPNG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
66.6
38.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.6
-1
3.4
60.6
44.6
Minor BPS
45.6
-0.2
1.9
65.18
39.4

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125