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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104691865_104691927_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
104691865 - 104691927
Intron Length:
63

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTATACTT
5'SS Class:
weak_major
3'SS Sequence:
AATTGCAGCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTGTTGTAATT
Flanking Amino Acid:
IGNRKHGASF
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.2
0
1.5
59.2
45
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
48.7
-0
1.2
42.8
41.5
Minor 5ss
26.4
-2.7
4.1
46
41.9
Minor BPS
50
0.08
2
72.81
39.3

Associated Gene:

Gene:
NBAS
Ensembl Gene ID:
ENSAPLG00000012361
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012954
104519805 - 104691929
172125