Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104703175_104703989_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104703175 - 104703989

Intron Length:

815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCAAACTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

TGTCTTTCAAAC

Flanking Amino Acid:

GKATIKTGGAVLNKWQMNPY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

0.7

0.9

79.6

29.1

Major PPT

0.36

0.9

64.1

35.9

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

49.8

-0

1.6

61.96

36.9

Associated Gene:

Gene:

DDX1

Ensembl Gene ID:

ENSAPLG00000011093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011668

104700997 - 104718747

17751