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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104704038_104704170_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104704038 - 104704170
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTCTATATAA
Flanking Amino Acid:
MNPYDRGSAFAIGSDGLCCQ
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.1
0.77
0.8
81.6
35
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
53.5
0.11
1.9
73.59
38

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751