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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104705750_104707033_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104705750 - 104707033
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGAGTTTAACA
Flanking Amino Acid:
HNKQFDSYGEEFTMHDTIGC
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.74
0.7
78.2
28.9
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
54.9
0.15
1.8
64.51
42

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751