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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104708196_104708666_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104708196 - 104708666
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
DGSVVKSQHAGNAQVVQTQN
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
0.8
79.2
33
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751