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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104716607_104717007_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104716607 - 104717007
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAC
U12 Branch Point Sequence:
GTGTCTTCTACA
Flanking Amino Acid:
RGIDIHGVPYVINVTLPDEK
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
52.6
0.07
1.1
60.7
37.6
Major PPT
79.2
0.66
0.9
72.7
37.6
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
50.7
0.01
1.9
64.14
42.1

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751