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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104717240_104717465_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104717240 - 104717465
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCCCTTATTT
Flanking Amino Acid:
ISLVAKEKEKVWYHVCSSRG
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.8
0.6
0.8
69
36
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
74
0.83
1.5
89.57
34.9

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751