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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104718312_104718616_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104718312 - 104718616
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATCACTTAGACT
Flanking Amino Acid:
VTYGQKRALGGGLYKGHVDI
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
85.4
0.8
0.9
83.9
31
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
51.9
0.14
1.7
69.6
41.8

Associated Gene:

Gene:
DDX1
Ensembl Gene ID:
ENSAPLG00000011093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011668
104700997 - 104718747
17751