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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_104895003_104895984_F

Intron Information:

Intron Rank:
123572
Intron Class:
major
Intron Phase:
Intron Coordinates:
104895003 - 104895984
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTAAG
5'SS Class:
major
3'SS Sequence:
TTCCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TTAGTCTAATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
63.9
41.8
Major BPS
71.4
0.53
1
67
39.8
Major PPT
83.7
0.76
0.7
80.8
24.3
Minor 5ss
44.1
-0.6
2.6
60.4
44.2
Minor BPS
49.2
0.02
2
71.82
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016632
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040513
104894948 - 104900841
5894