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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105039144_105043898_F

Intron Information:

Intron Rank:
133678
Intron Class:
major
Intron Phase:
Intron Coordinates:
105039144 - 105043898
Intron Length:
4755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCACCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTGATTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.9
0.58
0.8
69.6
30.8
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
60.5
0.31
1.6
69.27
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023268
105038501 - 105044090
5590