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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105073011_105073513_F

Intron Information:

Intron Rank:
133217
Intron Class:
major
Intron Phase:
Intron Coordinates:
105073011 - 105073513
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATGCATTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GGTATCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
72
0.5
0.9
62.4
43
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
50
0.08
1.7
67.58
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030514
105072683 - 105075971
3289