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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105083107_105091482_R

Intron Information:

Intron Rank:
130380
Intron Class:
major
Intron Phase:
Intron Coordinates:
105083107 - 105091482
Intron Length:
8376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTGTTTATCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.8
0.74
0.8
81.7
34.6
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044241
105082856 - 105092427
9572
ENSAPLT00000023590
105082890 - 105092080
9191