Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105131443_105135592_R

Intron Information:

Intron Rank:

136672

Intron Class:

major

Intron Phase:

Intron Coordinates:

105131443 - 105135592

Intron Length:

4150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTTAG

5'SS Class:

strong_major

3'SS Sequence:

GTATGTCTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAC

U12 Branch Point Sequence:

GTACAATCAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

72.7

34.5

Major BPS

68.4

0.46

0.9

69.3

26.9

Major PPT

66.1

0.36

1.1

68.4

42.3

Minor 5ss

40.2

-1.1

2.7

48.2

47.9

Minor BPS

46.7

-0.1

66.74

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037926

105130806 - 105177885

47080