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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105160467_105163707_F

Intron Information:

Intron Rank:
123317
Intron Class:
major
Intron Phase:
Intron Coordinates:
105160467 - 105163707
Intron Length:
3241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
AATTATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
AGAACATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
74.6
0.55
1
66.7
42.8
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
61.8
0.45
1.7
74.97
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016489
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020337
105160302 - 105169641
9340