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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105163990_105167373_R

Intron Information:

Intron Rank:
132032
Intron Class:
major
Intron Phase:
Intron Coordinates:
105163990 - 105167373
Intron Length:
3384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
34.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
28.4
-2.5
3
34.8
41.6
Minor BPS
65.7
0.49
1.9
78.05
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018275
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019009
105163477 - 105179710
16234