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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105195077_105203219_F

Intron Information:

Intron Rank:
150195
Intron Class:
major
Intron Phase:
Intron Coordinates:
105195077 - 105203219
Intron Length:
8143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTCTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
61
0.43
1.9
84.4
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034310
105186829 - 105203372
16544