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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105364436_105366485_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105364436 - 105366485
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTATTTACTG
Flanking Amino Acid:
DTVEGLLNALRFTTKHLNDE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.3
0.57
0.9
66.9
43.8
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
57.1
0.08
1.8
67.74
40.6

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009959
105364329 - 105403540
39212
ENSAPLT00000037260
105364329 - 105387098
22770
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770