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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105366557_105369118_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105366557 - 105369118
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATTGTTCAATA
Flanking Amino Acid:
GAFSKTSKIDMKGCIKVLKE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
86.6
28.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.1
0.68
0.8
72.1
37.9
Minor 5ss
41.8
-0.9
3.2
63.2
41.1
Minor BPS
53.7
0.11
1.9
68.45
38.4

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770
ENSAPLT00000009959
105364329 - 105403540
39212
ENSAPLT00000037260
105364329 - 105387098
22770