About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105371113_105371210_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105371113 - 105371210
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
TTAACCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTATTTTTAACC
Flanking Amino Acid:
SNATTHFVSENKTLPIENTT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80.7
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.1
0.5
0.9
63.1
39.2
Minor 5ss
37.7
-1.4
3.1
50.6
40.3
Minor BPS
73
0.7
1.2
74.26
36.7

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037260
105364329 - 105387098
22770
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770
ENSAPLT00000009959
105364329 - 105403540
39212