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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105371328_105371577_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105371328 - 105371577
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
GTTTTACTAACT
Flanking Amino Acid:
ISRNRINNMHLDIENEVNNE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
78.4
0.64
1
78
40.1
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
59.4
0.37
1.9
82.74
37.8

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770
ENSAPLT00000009959
105364329 - 105403540
39212
ENSAPLT00000037260
105364329 - 105387098
22770