About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105371656_105371739_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105371656 - 105371739
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTCCTATTT
Flanking Amino Acid:
HFTLRFDELKMRNPAIQNDF
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.8
0.4
1
71.8
33.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
55.1
0.24
1.9
77.44
39.2

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009959
105364329 - 105403540
39212
ENSAPLT00000037260
105364329 - 105387098
22770
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770