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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105373155_105374022_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105373155 - 105374022
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
GTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATTT
Flanking Amino Acid:
YKGAGQEIRDAIQNPNDIQL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.9
30.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
48
-0.2
2.5
61.7
43.4
Minor BPS
48.2
-0
1.7
65.49
40.1

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022417
105364329 - 105385345
21017
ENSAPLT00000018909
105364329 - 105387098
22770
ENSAPLT00000009959
105364329 - 105403540
39212
ENSAPLT00000037260
105364329 - 105387098
22770