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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105376047_105384997_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105376047 - 105384997
Intron Length:
8951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TACTGATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTACTTAACA
Flanking Amino Acid:
QGPNFFLDFESDSFLPPTSL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73
33.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.3
0.5
0.9
65.5
39.9
Minor 5ss
35
-1.7
2.9
39.8
40.3
Minor BPS
85.5
1.11
1.3
92.79
26.1

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018909
105364329 - 105387098
22770